Tags: biology

All Categories (1-20 of 27)

  1. 2017-Byrne-FurtherMathBiology-Notes

    05 Apr 2020 | Contributor(s):: Brian Winkel

    2017-Byrne-FurtherMathBiology-NotesByrne, Helen. 2017. Further Mathematics Biology. Lecture notes. University of Oxford. An outline for this course. We will observe that many phenomena in ecology, biology and biochemistry can be modelled mathematically. We will...

  2. 2018-Sonntag_LectureNotes-MathSystemsBiology

    22 Mar 2020 | Contributor(s):: Brian Winkel

    2018-Sonntag_LectureNotes-MathSystemsBiologySontag, Eduardo D. 2018. Lecture Notes on Mathematical Systems Biology.  305 pp. http://www.sontaglab.org/publications.html. Accessed 20 March 2020.The first version of these notes dates back to 2005. They were originally heavily...

  3. 2007-Altafini-ODEModelsInSystemBiology

    20 Mar 2020 | Contributor(s):: Brian Winkel

    2007-Altafini-ODEModelsInSystemBiologyAltafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides.From Opening SlideSystems Biology = investigates function of genetic, molecular and cellular processes in a systematic...

  4. 2017-Goulet-Parameter Estimation in Chemical Kinetics

    20 Mar 2020 | Contributor(s):: Brian Winkel

    2017-Goulet-Parameter Estimation in Chemical KineticsGoulet, D. 2017. Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments. SIAM REVIEW. 58(2): 331–353.Abstract. In many chemical and biological applications, systems of differential equations containing...

  5. 2005-Breitling-ModelingBiologicalSystemsWithDifferentialEquations-PowerPoint

    15 Mar 2020 | Contributor(s):: Brian Winkel

    2005-Breitling-ModelingBiologicalSystemsWithDifferentialEquationsBreitling, Rainer. 2005. Modelling Biological Systems with Differential Equations. PowerPoint Presntation. 51 slides.Outline:•Part 1: Why modelling?•Part 2: The statistical physics of...

  6. 2003-Knorrenschild-Gross-Text Books on Mathematical Modeling in Biology

    13 Mar 2020 | Contributor(s):: Brian Winkel

                    Text Books on Mathematical Modeling in BiologyCompiled from the Internet by Michael Knorrenschild,modified by Louis Gross, Oct. 1995, May 2000, March 2001, June 2003 Allan, Linda J....

  7. Christina Alvey – Zombie Apocalypse in a Mathematical Biology Course

    19 Jan 2018 | | Contributor(s):: Christina Alvey

    Zombie Apocalypse in a Mathematical Biology Course By Christina Alvey, Mount Saint Mary College. A talk given at the AMS Special Session on Modeling in Differential Equations - High School, Two-Year College, Four-Year Institution at Joint Mathematics Meetings, San Diego CA, 9-13 January...

  8. 2012-Dominguez-GomperzModel-AnalytisForTumors

    28 Nov 2017 | | Contributor(s):: Brian Winkel

    Domingues, José Sérgio. 2012.  Gompertz Model: Resolution and Analysis for Tumors. Journal of Mathematical Modelling and Application. 1(7): 70-77.Abstract:  It is called cancer a wide range of diseases that has in common an unusual cells proliferation of the organism...

  9. 2008-BrewerEtAl-Fitting ordinary differential equations to short time course data

    21 Sep 2017 | | Contributor(s):: Brian Winkel

    Brewer, D., M. Barenco, R. Callars, M. Hubank, and J. Stak. 2008. Fitting ordinary differential equations to short time course data. Phil. Trans. R. Soc. A. 366: 519–544.Abstract: Ordinary differential equations (ODEs) are widely used to model many systems in physics, chemistry, engineering...

  10. Wu-Mathematical Biology Models Using Experimental Data

    12 Sep 2017 | | Contributor(s):: Brian Winkel

    Wu, Hulin.  Development of Mathematical Biology Models by Rigorously Using Experimental Data: Statistical Inverse Problems for Differential Equation Models. PowerPoint. 47 slides. _ Inverse Problems and Methods for ODE Models _ Application Examples – Example 1: A Complex Influenza...

  11. 2007-Chern-Mathematial Modeling and Differential Equations

    11 Sep 2017 | | Contributor(s):: Brian Winkel

    2007-Chern-Mathematial Modeling and Differential EquationsChern, I-Liang. 2007. Mathematial Modeling and Differential Equations. Notes. 223 pp. http://www.math.ntu.edu.tw/~chern/notes/ode2015.pdf . Accessed 10 September 2017.From the first chapter,In science, we explore and understand our real...

  12. 2011-Rodriguez-PDE Modeling Crime And Bio Applications

    09 Sep 2017 | | Contributor(s):: Brian Winkel

    Rodrıguez, Nancy. 2011. Applied Partial Differential Equations in Crime Modeling and Biological Aggregation . PhD Thesis. 137 pp. UCLA.From the opening,“Recently, there has been sustained interest in the use of partial differential equation (PDE) models to obtain insight into biological and...

  13. 2012-Ingalls-Mathematical Modeling In Systems Biology Text

    08 Sep 2017 | | Contributor(s):: Brian Winkel

    Ingalls, Brian. 2012. Mathematical Modelling in Systems Biology: An Introduction. pp. 396. Notes. https://www.math.uwaterloo.ca/~bingalls/MMSB/Notes.pdf . Accessed 7 September 2017.This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and...

  14. Differential Equations in Biology and Agricultural Sciences - Resources and Reviews

    24 May 2017 | Posted by Brian Winkel

    We received an email today from Professor Chris Rawlings, Head of Computational and Analytical Sciences, Rothamsted Research, Harpenden, Hertfordshire, United Kingdom, about resources and...

    https://simiode.org/blog/2017/05/differential-equations-in-biologiy-and-agricultural-sciences---resources-and-reviews

  15. Analysis of logistic growth models

    02 Mar 2017 | | Contributor(s):: Brian Winkel

    Tsoularis, A. 2001. Analysis of logistic growth models. Research Letters in the Information and Mathematical Sciences. 2:23-46. Full article available at http://mro.massey.ac.nz/handle/10179/4341 .Article Abstract: A variety of growth curves have been developed to model both unpredated,...

  16. Curve fitting guide

    01 Mar 2017 | | Contributor(s):: Brian Winkel

    Fitting Models to Biological Data Using Linear and Nonlinear Regression: A Practical Guide to Curve FittingMotulsky, Harvey and Arthur Christopoulos. 2001. Fitting Models to Biological Data Using Linear and Nonlinear Regression: A Practical Guide to Curve Fitting. La Jolla CA: GraphPad Software....

  17. Bio Models Database

    01 Mar 2017 | | Contributor(s):: Brian Winkel

    Bio Models Database. 2015. The European Bioinformatics Institute. http://www.ebi.ac.uk/biomodels-main/. Accessed 15 March 2015.Part of the European Molecular Biology Laboratory at the Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK, EMBL-EBI provides freely available data from...

  18. 1-110-S-SnailsInaTidePool

    04 Oct 2016 | | Contributor(s):: Lisa Driskell, Audrey Malagon

  19. Biology-Driven Approaches to Teaching Differential Equations

    30 Sep 2015 | | Contributor(s):: Brian Winkel

    At the International Symposium on Biomathematics and Ecology Education and Research 2015 (see https://about.illinoisstate.edu/biomath/beer/Pages/default.aspx), 9-11 October 2015, Illinois State University, State Farm Hall of Business 145, 9:15-9:40 AM , Brian Winkel  gives talk,...

  20. 2010-JungckEtAl-Epidemic Modeling with Bean Bags

    30 Jun 2015 | | Contributor(s):: John R. Jungck, Holly Gaff, Anton E. Weisstein

    Jungck, John R., Holly Gaff, and Anton E. Weisstein. 2010.  Mathematical Manipulative Models: In Defense of “Beanbag Biology”. CBE—Life Sciences Education. 9: 201–211.This paper offers up samples of projects from the  Bio- QUEST Curriculum Consortium’s...